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A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival. Abassah-Oppong, Samuel , Zoia, Matteo , Mannion, Brandon J , Rouco, Raquel , Tissières, Virginie , Spurrell, Cailyn H , Roland, Virginia , Darbellay, Fabrice , Itum, Anja , Gamart, Julie , Festa-Daroux, Tabitha A , Sullivan, Carly S , Kosicki, Michael , Rodríguez-Carballo, Eddie , Fukuda-Yuzawa, Yoko , Hunter, Riana D , Novak, Catherine S , Plajzer-Frick, Ingrid , Tran, Stella , Akiyama, Jennifer A , Dickel, Diane E , LÓPEZ-RÍOS MORENO, JAVIER, Barozzi, Iros , Andrey, Guillaume , Visel, Axel , Pennacchio, Len A , Cobb, John , Osterwalder, Marco 10/10/2024 Article |
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Increased enhancer-promoter interactions during developmental enhancer activation in mammals Chen, Zhuoxin , Snetkova, Valentina , Bower, Grace , Jacinto, Sandra , Clock, Benjamin , Dizehchi, Atrin , Barozzi, Iros , Mannion, Brandon J. , Alcaina-Caro, Ana , LÓPEZ-RÍOS MORENO, JAVIER, Dickel, Diane E. , Visel, Axel , Pennacchio, Len A. , Kvon, Evgeny Z. 01/04/2024 Article |
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The cellular landscape of the endochondral bone during the transition to extrauterine life Rueda, Alejandro Diaz , Salvador-Martinez, Irepan , Sospedra-Arrufat, Ismael , Alcaina-Caro, Ana , Fernandez-Minan, Ana , Burgos-Ruiz, Ana M. , Cases, Ildefonso , Mohedano, Alberto , Tena, Juan J. , Heyn, Holger , LÓPEZ-RÍOS MORENO, JAVIER, Nusspaumer, Gretel 01/02/2024 Article |
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Pathogenic Aß production by heterozygous PSEN1 mutations is intrinsic to the mutant protein and not mediated by conformational hindrance of wild-type PSEN1 Kurth, Vanessa , Ogorek, Isabella , Muench, Carolina , LÓPEZ-RÍOS MORENO, JAVIER, Ousson, Solenne , Lehmann, Sandra , Nieweg, Katja , Roebroek, Anton J. M. , Pietrzik, Claus U. , Beher, Dirk , Weggen, Sascha 01/08/2023 Article |
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Topologically associating domain boundaries are required for normal genome function Rajderkar, Sudha , Barozzi, Iros , Zhu, Yiwen , Hu, Rong , Zhang, Yanxiao , Li, Bin , Caro, Ana Alcaina , Fukuda-Yuzawa, Yoko , Kelman, Guy , Akeza, Adyam , Blow, Matthew J. , Pham, Quan , Harrington, Anne N. , Godoy, Janeth , Meky, Eman M. , von Maydell, Kianna , Hunter, Riana D. , Akiyama, Jennifer A. , Novak, Catherine S. , Plajzer-Frick, Ingrid , Afzal, Veena , Tran, Stella , LÓPEZ-RÍOS MORENO, JAVIER, Talkowski, Michael E. , Lloyd, K. C. Kent , Ren, Bing , Dickel, Diane E. , Visel, Axel , Pennacchio, Len A. 20/04/2023 Article |
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The little skate genome and the evolutionary emergence of wing-like fins Marletaz, Ferdinand , de la Calle-Mustienes, Elisa , Acemel, Rafael D. , Paliou, Christina , Naranjo, Silvia , Martinez-Garcia, Pedro Manuel , Cases, Ildefonso , Sleight, Victoria A. , Hirschberger, Christine , Marcet-Houben, Marina , Navon, Dina , Andrescavage, Ali , Skvortsova, Ksenia , Duckett, Paul Edward , Gonzalez-Rajal, Alvaro , Bogdanovic, Ozren , Gibcus, Johan H. , Yang, Liyan , Gallardo-Fuentes, Lourdes , Sospedra, Ismael , LÓPEZ-RÍOS MORENO, JAVIER, Darbellay, Fabrice , Visel, Axel , Dekker, Job , Shubin, Neil , Gabaldon, Toni , Nakamura, Tetsuya , Tena, Juan J. , Lupianez, Dario G. , Rokhsar, Daniel S. , Gomez-Skarmeta, Jose Luis 20/04/2023 Article |
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The Shh/Gli3 gene regulatory network precedes the origin of paired fins and reveals the deep homology between distal fins and digits Letelier, Joaquin , Naranjo, Silvia , Sospedra-Arrufat, Ismael , Ramon Martinez-Morales, Juan , LÓPEZ-RÍOS MORENO, JAVIER, Shubin, Neil , Luis Gomez-Skarmeta, Jose 16/11/2021 Article |
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Spatial regulation by multiple Gremlin1 enhancers provides digit development with cis-regulatory robustness and evolutionary plasticity Malkmus, Jonas , Martins, Laurene Ramos , Jhanwar, Shalu , Kircher, Bonnie , Palacio, Victorio , Sheth, Rushikesh , Leal, Francisca , Duchesne, Amandine , LÓPEZ-RÍOS MORENO, JAVIER, Peterson, Kevin A. , Reinhardt, Robert , Onimaru, Koh , Cohn, Martin J. , Zuniga, Aimee , Zeller, Rolf 21/09/2021 Article |
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Gene Regulatory and Expression Differences between Mouse and Pig Limb Buds Provide Insights into the Evolutionary Emergence of Artiodactyl Traits Tissieres, Virginie , Geier, Florian , Kessler, Barbara , Wolf, Eckhard , Zeller, Rolf , LÓPEZ-RÍOS MORENO, JAVIER 07/04/2020 Article |
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Enhancer redundancy provides phenotypic robustness in mammalian development Osterwalder, Marco , Barozzi, Iros , Tissieres, Virginie , Fukuda-Yuzawa, Yoko , Mannion, Brandon J. , Afzal, Sarah Y. , Lee, Elizabeth A. , Zhu, Yiwen , Plajzer-Frick, Ingrid , Pickle, Catherine S. , Kato, Momoe , Garvin, Tyler H. , Pham, Quan T. , Harrington, Anne N. , Akiyama, Jennifer A. , Afzal, Veena , LÓPEZ-RÍOS MORENO, JAVIER, Dickel, Diane E. , Visel, Axel , Pennacchio, Len A. 08/02/2018 Article |
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HAND2 Target Gene Regulatory Networks Control Atrioventricular Canal and Cardiac Valve Development Laurent, Frederic , Girdziusaite, Ausra , Gamart, Julie , Barozzi, Iros , Osterwalder, Marco , Akiyama, Jennifer A. , Lincoln, Joy , LÓPEZ-RÍOS MORENO, JAVIER, Visel, Axel , Zuniga, Aimee , Zeller, Rolf 23/05/2017 Article |
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Progressive Loss of Function in a Limb Enhancer during Snake Evolution Kvon, Evgeny Z. , Kamneva, Olga K. , Melo, Uira S. , Barozzi, Iros , Osterwalder, Marco , Mannion, Brandon J. , Tissieres, Virginie , Pickle, Catherine S. , Plajzer-Frick, Ingrid , Lee, Elizabeth A. , Kato, Momoe , Garvin, Tyler H. , Akiyama, Jennifer A. , Afzal, Veena , LÓPEZ-RÍOS MORENO, JAVIER, Rubin, Edward M. , Dickel, Diane E. , Pennacchio, Len A. , Visel, Axel 20/10/2016 Article |
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The many lives of SHH in limb development and evolution LÓPEZ-RÍOS MORENO, JAVIER 01/01/2016 Review |
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Hand2 Is an Essential Regulator for Two Notch-Dependent Functions within the Embryonic Endocardium VanDusen, Nathan J. , Casanovas, Jose , Vincentz, Joshua W. , Firulli, Beth A. , Osterwalder, Marco , LÓPEZ-RÍOS MORENO, JAVIER, Zeller, Rolf , Zhou, Bin , Grego-Bessa, Joaquim , Luis De La Pompa, Jose , Shou, Weinian , Firulli, Anthony B. 24/12/2014 Article |
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HAND2 Targets Define a Network of Transcriptional Regulators that Compartmentalize the Early Limb Bud Mesenchyme Osterwalder, Marco , Speziale, Dario , Shoukry, Malak , Mohan, Rajiv , Ivanek, Robert , Kohler, Manuel , Beisel, Christian , Wen, Xiaohui , Scales, Suzie J. , Christoffels, Vincent M. , Visel, Axel , LÓPEZ-RÍOS MORENO, JAVIER, Zeller, Rolf 10/11/2014 Article |
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Conserved cis-regulatory regions in a large genomic landscape control SHH and BMP-regulated Gremlin1 expression in mouse limb buds Zuniga, Aimee , Laurent, Frederic , LÓPEZ-RÍOS MORENO, JAVIER, Klasen, Christian , Matt, Nicolas , Zeller, Rolf 13/08/2012 Article |
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GLI3 Constrains Digit Number by Controlling Both Progenitor Proliferation and BMP-Dependent Exit to Chondrogenesis LÓPEZ-RÍOS MORENO, JAVIER, Speziale, Dario , Robay, Dimitri , Scotti, Martina , Osterwalder, Marco , Nusspaumer, Gretel , Galli, Antonella , Hollaender, Georg A. , Kmita, Marie , Zeller, Rolf 17/04/2012 Article |
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Dual RMCE for efficient re-engineering of mouse mutant alleles Osterwalder, Marco , Galli, Antonella , Rosen, Barry , Skarnes, William C. , Zeller, Rolf , LÓPEZ-RÍOS MORENO, JAVIER 01/11/2010 Article |
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Human intronic enhancers control distinct sub-domains of Gli3 expression during mouse CNS and limb development Abbasi, Amir A. , Paparidis, Zissis , Malik, Sajid , Bangs, Fiona , Schmidt, Ansgar , Koch, Sabine , LÓPEZ-RÍOS MORENO, JAVIER, Grzeschik, Karl-Heinz 28/04/2010 Article |
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Recapitulation of endochondral bone formation using human adult mesenchymal stem cells as a paradigm for developmental engineering Scotti, Celeste , Tonnarelli, Beatrice , Papadimitropoulos, Adam , Scherberich, Arnaud , Schaeren, Stefan , Schauerte, Alexandra , LÓPEZ-RÍOS MORENO, JAVIER, Zeller, Rolf , Barbero, Andrea , Martin, Ivan 20/04/2010 Article |
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Vertebrate limb bud development: moving towards integrative analysis of organogenesis Zeller, Rolf , LÓPEZ-RÍOS MORENO, JAVIER, Zuniga, Aimee 01/12/2009 Review |
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The Netrin-related domain of Sfrp1 interacts with Wnt ligands and antagonizes their activity in the anterior neural plate LÓPEZ-RÍOS MORENO, JAVIER, Esteve, Pilar , Ruiz, Jose Maria , Bovolenta, Paola 20/08/2008 Article |
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Beyond Wnt inhibition: new functions of secreted Frizzled-related proteins in development and disease Bovolenta, Paola , Esteve, Pilar , Ruiz, Jose Maria , Cisneros, Elsa , LÓPEZ-RÍOS MORENO, JAVIER 15/03/2008 Review |
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Ultraconserved non-coding sequence element controls a subset of spatiotemporal GLI3 expression Paparidis, Zissis , Abbasi, Amir Ali , Malik, Sajid , Goode, Debbie K. , Callaway, Heather , Elgar, Greg , deGraaff, Esther , LÓPEZ-RÍOS MORENO, JAVIER, Zeller, Rolf , Grzeschik, Karl-Heinz 01/08/2007 Article |
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Reduction of BMP4 activity by gremlin 1 enables ureteric bud outgrowth and GDNF/WNT11 feedback signalling during kidney branching morphogenesis Michos, Odyssé , Goncalves, Alexandre , LÓPEZ-RÍOS MORENO, JAVIER, Tiecke, Eva , Naillat, Florence , Beier, Konstantin , Galli, Antonella , Vainio, Seppo , Zeller, Rolf 01/07/2007 Article |
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SFRP1 is required for the proper establishment of the eye field in the medaka fish Esteve, P , LÓPEZ-RÍOS MORENO, JAVIER, Bovolenta, P 01/07/2004 Article |
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Six3 and Six6 activity is modulated by members of the groucho family LÓPEZ-RÍOS MORENO, JAVIER, Tessmar, K , Loosli, F , Wittbrodt, J , Bovolenta, P 01/01/2003 Article |
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Genomic cloning and characterization of the human homeobox gene SIX6 reveals a cluster of SIX genes in chromosome 14 and associates SIX6 hemizygosity with bilateral anophthalmia and pituitary anomalies Gallardo, ME , LÓPEZ-RÍOS MORENO, JAVIER, Fernaud-Espinosa, I , Granadino, B , Sanz, R , Ramos, C , Ayuso, C , Seller, MJ , Brunner, HG , Bovolenta, P , de Córdoba, SR 01/10/1999 Article |
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Six9 (Optx2), a new member of the Six gene family of transcription factors, is expressed at early stages of vertebrate ocular and pituitary development LÓPEZ-RÍOS MORENO, JAVIER, Gallardo, ME , de Córdoba, SR , Bovolenta, P 01/05/1999 Article |
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Genomic cloning, structure, expression pattern, and chromosomal location of the human SIX3 gene Granadino, B , Gallardo, ME , LÓPEZ-RÍOS MORENO, JAVIER, Sanz, R , Ramos, C , Ayuso, C , Bovolenta, P , de Córdoba, SR 01/01/1999 Article |